Our Software

ASDP

ASDP is an automated NMR NOE assignment engine. It uses a distinct bottom-up topology-constrained approach for iterative NOE interpretation and generates 3D structures of the protein that is as close to the true structure as possible.

Primer Prim’er

Primer Prim’er designs PCR primer sets for endonuclease
and viral recombinase based cloning strategies.

pXs (probability of crystal structure) calculator

pXs calculates the probability of a given protein sequence to yield a X-Ray structure.

PSVS (Protein Structure Validation Software Suite)

PSVS is used for assessment of protein structures generated from NMR, X-ray crystallographic and homology modeling methods.

RPF (Recall, Precision, and F-measure scores)

Structure quality assessment measurements based on information retrieval statistics

Dismeta- Disorder prediction meta-server

Dismeta polls a number of disorder predictors and reports the results of each. Consensus disorder is plotted per residue.

NESG NMR wiki

The NESG wiki shares experimental protocols as well as training and educational materials in the fields of structural biology, structural genomics and biomolecular NMR.

AutoAssign

AutoAssign is a constraint-based expert system for automating the analysis of backbone resonance assignments using NMR spectra.

Structure Superposition with FindCore and PDBstat

A structure superimposition server using ordered residues or core residues, based on PdbStat and FindCore respectively.

AVS- Chemical Shift Assignment Validation Server

AVS is used to validate chemical shift data, flagging shifts that are outside the range typically observed in proteins.

HOMA (Homology Modeling Automatically

Homology modeling server that generates models by satisfying sets of spatial restraints dervided from the provided template.

NMR 2.0

NMR 2.0 provides a collection of collaborative and instructive tools to advance NMR studies.